PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.126730.1
Common NameCsa_1G074400, LOC101210203
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 205aa    MW: 23251.2 Da    PI: 6.5301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.126730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-101664655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +Er+RR++++  f++L +llP+          +  + Le A++YIk+Lq
  Cucsa.126730.1 16 KFVERNRRKEMKALFSTLNSLLPNqT--SMEAPRTVPDQLEDATNYIKELQ 64
                    568*********************44..577779999*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-11976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.281063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-61265No hitNo description
Gene3DG3DSA:4.10.280.103.7E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00141669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-71764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSNPIRCQPT PQSNRKFVER NRRKEMKALF STLNSLLPNQ TSMEAPRTVP DQLEDATNYI  60
KELQKNIKKL KEKKEKLIGM EEDEEAEGRR RRRGYEDETK PKLSVHVKAH QIGSSVEVFL  120
TTGSDYHFNL QQVLRLLQDN GAEILNVNQS MFTDRVFHKI TAQVDGEGIL GGGDGERICE  180
TVKKYVSEYK DGECSVEGNG GEDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-132LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-132LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146605.11e-151PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0A0LUL31e-151A0A0A0LUL3_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2140934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-16bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]